Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIKNKVIIITGASSGIGKATALLLAEKGAKLVLAARRVE-KLEKIVQTIKANSGEAIFAKTDVTKREDNKKLVELAIERYGKVDAIFLNAGIMPNSPLSA--LKEDEWEQMIDINIKGVLNGIAAVLPSFIAQK-SGHIIATSSVAGLKAYPGGAVYGATKWAVRDLMEVLRMESAQEGTNIRTVTIYPAAINTEL-LETITDKETEQGMTSLYKQ-YGITPDRIASIVAYAIDQPEDVNVNEFTVGPTSQPW
1GCO Chain:F ((5-230))
--LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGL--ENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKG--IRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAW----------------------
General information:
TITO was launched using:
RESULT:
Template:
1GCO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122447 for 1827 contacts (-67.0/contact) +
2D Compatibility (PS) -23731 + (NN) -3984 + (LL) 1132
1D Compatibility (HY) -14000 + (ID) 3850
Total energy: -166880.0 ( -91.34 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_1GCO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GCO-query.scw
PDB file :
Tito_Scwrl_1GCO.pdb
: