Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVVVKNVTFGEGAPKICVPMVGKTVAALKEEAEMLQTIDLDVVEWRVDFFEDVKDLAKVEAALGEIRAILPETPILFTFRSAKEGGELAVSDEFYFELNETLAGTGKIDLVDVELFNEEADVLRLIETAHKNNVKVVMSNHDFDKTPAKEEIVSRLTRMEALGADLPKIAVMPKSAGDVLTLLDATNTVFEK-ANQPIITMSMAGTGVISRLAGEVFGSAMTFGAAKKASAPGQIDVNELRHVLDLLHKQF
4CNN Chain:B ((2-250))
-KTVTVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVLRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVK----PGQIAVNDLRSVLMILH---
General information:
TITO was launched using:
RESULT:
Template:
4CNN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138331 for 2099 contacts (-65.9/contact) +
2D Compatibility (PS) -26924 + (NN) -14196 + (LL) 848
1D Compatibility (HY) -24000 + (ID) 6650
Total energy: -209253.0 ( -99.69 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_4CNN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CNN-query.scw
PDB file :
Tito_Scwrl_4CNN.pdb
: