Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLRLQFHKKLPFHDLNIDYTFEKPVTAMMGASGSGKSTLFQCVSGLKSIDGGIIEFDGTPWDDSNISLHLPVTERKVGYLFQNLALFPNMNVYENIAFG-LKVKKKKKKEQAEIQQQVRKMSDYLQISHLLYSSVQ---KLSGGEKQRVAMARAMITEPKLLLLDEPFNGLDEETRLICMKLVGQMAKDFHIPVIFVTHYASEAEMMTEEILVMREGRLEKRKS
4YMV Chain:J ((29-212))
------------------------VVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINNGKVNINK--VRQKVGMVFQHFNLFPHLTAIENITLAPVKVKKMNKKEAEELA------VDLLAKVGLLDKKDQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANE-GMTMVVVTHEMGFAREVGDRVIFMDDG-------
General information:
TITO was launched using:
RESULT:
Template:
4YMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102329 for 1388 contacts (-73.7/contact) +
2D Compatibility (PS) -19873 + (NN) -9247 + (LL) 3316
1D Compatibility (HY) -16800 + (ID) 3350
Total energy: -148283.0 ( -106.83 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_4YMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMV-query.scw
PDB file :
Tito_Scwrl_4YMV.pdb
: