Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKMMVMGSVGCGKTTLCQKLHGYDILYKKTQAVEYFQEMIDTPGEFV-------QHRQLYSALTVTAADASVIAILQSVTEKKQTFSPMFASIFA------KPVIGIVTKVDL--AESDKDIERAERELRMAGAK-----HIFYISSVEETGIEELRAYLED--
1M2O Chain:B ((24-190))
-GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI
General information:
TITO was launched using:
RESULT:
Template:
1M2O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44229 for 1028 contacts (-43.0/contact) +
2D Compatibility (PS) -14961 + (NN) 511 + (LL) 176
1D Compatibility (HY) -4800 + (ID) 1350
Total energy: -64653.0 ( -62.89 by residue)
QMean score : 0.276
(partial model without unconserved sides chains):
PDB file :
Tito_1M2O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M2O-query.scw
PDB file :
Tito_Scwrl_1M2O.pdb
: