Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKAT--RNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKS--TKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNLLDATDEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLGK
3UHF Chain:A ((24-271))
-AMKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQKRLLSQGYT-NINALATGLFVPMVEEGIFEG----DFLQSAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENI-DLKN---HKAKLHFYASSDVESLKNTAKIWLNL------------
General information:
TITO was launched using:
RESULT:
Template:
3UHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173495 for 2191 contacts (-79.2/contact) +
2D Compatibility (PS) -25926 + (NN) -7536 + (LL) 1824
1D Compatibility (HY) -21200 + (ID) 4300
Total energy: -230633.0 ( -105.26 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_3UHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UHF-query.scw
PDB file :
Tito_Scwrl_3UHF.pdb
: