Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIGIIGAMEEEVE-LLKNSMSSVEEIVIGGAKFYIGEIASKEVVLLESGIGKVNAALGTTLMADRFKPEVIINTGSAGGMAEGLAVGDVIISDRLAYGDVDVTEFGYTYGQVPRMPAFYQGDAVLLKKAETIYRE-YFATSENKAVYGLVVTNDSFIMRPDQHEIIRTFFPDVKAVEMEAAAIAQVAYQFDIPFLIIRAISDLANQEATISFDEFIHLAAKQSATCIIELLKTI
4FFS Chain:A ((13-229))
--IGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKE-----GVIASGDQFVHSKERKEFLVSEFK-ASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSA----------
General information:
TITO was launched using:
RESULT:
Template:
4FFS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133708 for 1860 contacts (-71.9/contact) +
2D Compatibility (PS) -23255 + (NN) -11283 + (LL) 1888
1D Compatibility (HY) -16000 + (ID) 3800
Total energy: -186158.0 ( -100.08 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_4FFS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FFS-query.scw
PDB file :
Tito_Scwrl_4FFS.pdb
: