Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNDIIHDYLLKNIPKSSPFFKELEA-YAKENEVP-IMEPDSLYCLLQILDIQKPKRILELGTAIGYSALKMADKL-PDAEIITVERDEERYEQAIHNIQRYGASDRVKVLLTDAIEGAEEIL---AHGPFDAIFIDAAKAQYEKFFHIYTVSLAENGVIYSDNVLFKGLALDMTPEKQRKLRVARKMRHFNDFLVTHPDFETTTIPLGDGLSISKRKKTGGVS
3CBG Chain:A ((21-232))
-DPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQ----EAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK------
General information:
TITO was launched using:
RESULT:
Template:
3CBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104353 for 1687 contacts (-61.9/contact) +
2D Compatibility (PS) -22245 + (NN) -11184 + (LL) 476
1D Compatibility (HY) -11600 + (ID) 2950
Total energy: -151856.0 ( -90.02 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_3CBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CBG-query.scw
PDB file :
Tito_Scwrl_3CBG.pdb
: