Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFLEEILAQKEVEVAKMPLEQVAEKRKTYSF-YEFLKANTNTMQLIAEVKRASPSKGEINMGVNPVLQAKSYQAAGAGMISVLTDPVFFKGSIEDLREVAKNVGIPVLCKDFIISEKQLIRARNAGATVVLLIISALTEEKLITLFEQALALDLEVLVEVHDQEELAVAQKIGAQLIGVNNRNLHTFEVDIAVSERLASDFS---SDACFISESGFRTAEDVARVSQKYDAVLVGEALMREATPEVAAKSLKVTR
1VC4 Chain:A ((10-253))
-GVLGEIARKRASEVAPYP---LPEPP-SVPSFKEALL--RPGLSVIAEVKRQSPSEGLIRE-VDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGE-LTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEGLFDAVLIGTSLMRAPDLEAALRELV---
General information:
TITO was launched using:
RESULT:
Template:
1VC4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154222 for 2090 contacts (-73.8/contact) +
2D Compatibility (PS) -26015 + (NN) -10052 + (LL) 1012
1D Compatibility (HY) -17600 + (ID) 4650
Total energy: -211527.0 ( -101.21 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_1VC4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VC4-query.scw
PDB file :
Tito_Scwrl_1VC4.pdb
: