Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKVRGFEVVNEASRKFPEQTISLPIRGDKGSAGYDFFSNETVTIVPGEKHIFWTDIKSYMQEDEVLNIYVRSSIGIKKGLLLCNGTGIIDSSYYSNPGNDGNIGIAIKNFSN-EPVSIEAGERVAQGVFQKYLVADTDI---------VANESRVGGVGSTGR
3HZA Chain:A ((28-170))
--------------VRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYR------GEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGWGSSGG
General information:
TITO was launched using:
RESULT:
Template:
3HZA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47468 for 858 contacts (-55.3/contact) +
2D Compatibility (PS) -14103 + (NN) -1150 + (LL) 644
1D Compatibility (HY) -6000 + (ID) 1900
Total energy: -69977.0 ( -81.56 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_3HZA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HZA-query.scw
PDB file :
Tito_Scwrl_3HZA.pdb
: