Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIAIFASGSGSNFQALVDDEFIKPYVKLLVC---DKPNAYVLERANKHDIPVFLFEAKNYPDKEAFETEILLELRRLEIDLLVLAGYMRLIGPTLLAEFPEQIVNLHPSLLPEFKGKDAIGQAIQANVSGTGVTAHFVDAGMDTGPIIDQVKVTIETAETTDTLAEKIHQVEHIFYPKVIRGLIQNGGND
4DS3 Chain:A ((9-199))
-RVVIFISGGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYMRLLSGRFIAPYEGRILNIHPSLLPLFPGLHTHQRALDAGMKLAGCTVHLVTE--DEGPILAQAAVPVLDGDTAETLAARVLKAEHRLYPLALQ---------
General information:
TITO was launched using:
RESULT:
Template:
4DS3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122026 for 1354 contacts (-90.1/contact) +
2D Compatibility (PS) -19536 + (NN) -14590 + (LL) -8
1D Compatibility (HY) -12800 + (ID) 3250
Total energy: -172210.0 ( -127.19 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_4DS3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DS3-query.scw
PDB file :
Tito_Scwrl_4DS3.pdb
: