Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MKLKKVAMGITVVMASSLLLVGCGSSDDSSKDKKSTDTKQTETKKTAKTDG--TMTDGTYKL---EEKNFDDKGWKGFMS-IEVKDGKITKA-NYDYKNKDGKLKSEDADYEKAMKDKVGTGPQEYLKQLSDSLVKNQSAASVEVVSGATHSSDAFINYANQLIQAAQKADTT----------------TISINNLAKMEDGTYKLEEQNYAH-GYRVVFSMDVKDGKITKSDYNYVDKDGKLKSDDADYEKNMKAKSGTGPKEYI-----PALNKSLVEKQDVAAVDTVSGATNSSNQFKIYAAQLQNAAQNGNTDTI------------KVYNLVEAE-------------------- |
| 4P5F Chain:A ((8-374)) | LTPTEAAVLRELRLHRPQLPLDTLLFT------DPNKDP--DDVVTYTIAKQLQADGFLRLTDVVVTLGDADMRSQRAQLAKGVFDRLALPDVRVARGQDYPMTSTQAREHSKFLAEGAALRAAPDAVHTDGVRAMCERLATSPHKLGMVVIAGMTDASALLAEAGDLVREKVASITIMGGIDPARDADGLVQPDTRAYNNATDIHAARALYRRAQQLGIPLRILTKEAAYKAAVPPAFYEGIARNGH---PVGEYLRDVQKNALKGLWEGIQANLIPGLDTAWFFRTFVAGALSFDAIWPQVTKLNLYDPLTLLAALPGTARLLFQPTPMHREGASPVEHVGHAEVVRPEKARLLLSALAKAALV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P5F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 137556 for 2391 contacts (57.5/contact) +
2D Compatibility (PS) -29762 + (NN) 4652 + (LL) -172
1D Compatibility (HY) -8400 + (ID) 2250
Total energy: 101624.0 ( 42.50 by residue)
QMean score : 0.037
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