Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAIFITLEGPDGSGKTT----VGTLLNQKMTEAGIDFIKTREPGGSPISEKVRNIVLGIGNEEMDPKTEVLLIAGARRQHVVETIRPALAAGKSVLCDRFMDSSLAYQGAGRDMNMEQVLQVNLYAIEDTLPDRTYYLDVPAEVGLARIAANKGREVNRLDKEDITYHEKVQAGYEKVINMFPERFMRVDATKTPEEITETILADILRQLA
3V9P Chain:A ((27-220))
----FITFEGID---KTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILL---NQPMDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAV--RMP---ESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQL---------
General information:
TITO was launched using:
RESULT:
Template:
3V9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28866 for 1318 contacts (-21.9/contact) +
2D Compatibility (PS) -19639 + (NN) -8240 + (LL) 1360
1D Compatibility (HY) -8400 + (ID) 3400
Total energy: -67185.0 ( -50.97 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_3V9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V9P-query.scw
PDB file :
Tito_Scwrl_3V9P.pdb
: