Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVRGFELVSQFSNKELLPKRETAHAAGYDLKVAKKTVIEPGEITLVPTGIKAHMQPGEVLYLYDRSSNPRKKGIVLINSVGVIDGDYYNNQVNEGHIFAQMQNITDQAVILEEGERIVQAVFAPFL-----LADDDQATGMRTGGFGSTGK
3C2T Chain:A ((6-125))
---------VKKLVESATTPMRGSEGAAGYDISSVEDVVVPAMGRIAVSTGISIRVPDGTYGRIAPRSGLAYKYGIDVL--AGVIDEDY------TGEVKVILYNTTERDYIIKKGDRIAQLILEQIVTPGVAVVLD----------------
General information:
TITO was launched using:
RESULT:
Template:
3C2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50053 for 812 contacts (-61.6/contact) +
2D Compatibility (PS) -12673 + (NN) -5198 + (LL) 792
1D Compatibility (HY) -6000 + (ID) 1700
Total energy: -74832.0 ( -92.16 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_3C2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C2T-query.scw
PDB file :
Tito_Scwrl_3C2T.pdb
: