Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILLESYEEIAAYI--DSTKKVVFFFTADWCPDCQFIYPVMPSIEKDFSDFVFVRVNRDDYIELAQQWNIFGIPSFVVVENGQELGRLVNKNRKTKAEITKFLAEINHK
1GH2 Chain:A ((4-107))
VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFRNKVRIDQYQG--A-DAVGLEEKIKQHLE-
General information:
TITO was launched using:
RESULT:
Template:
1GH2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101910 for 741 contacts (-137.5/contact) +
2D Compatibility (PS) -11255 + (NN) -3155 + (LL) 92
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -119528.0 ( -161.31 by residue)
QMean score : 0.708
(partial model without unconserved sides chains):
PDB file :
Tito_1GH2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GH2-query.scw
PDB file :
Tito_Scwrl_1GH2.pdb
: