Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVYLSLGSNIGDRETFLKQALFSIDHLQKTKVAQISAIYETAAWGNTNQEDFFNICCQVETDLAPFELLDYCQEIEKRLKRVRH-EHWGPRTIDIDILLFGNQVINQEDLVVPHPYMTKRAFVLVPLLEIAPQLSLPNGSKLEDYL-----EKLNLGEVHYLKPVE
1TMJ Chain:A ((1-156))
-TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERAGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW---------
General information:
TITO was launched using:
RESULT:
Template:
1TMJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122533 for 1137 contacts (-107.8/contact) +
2D Compatibility (PS) -15963 + (NN) -5813 + (LL) 744
1D Compatibility (HY) -13600 + (ID) 3300
Total energy: -160465.0 ( -141.13 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_1TMJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TMJ-query.scw
PDB file :
Tito_Scwrl_1TMJ.pdb
: