Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHSSWHDLIKRELPNHYYNKINTFMDAVYESGIVYPPRDKVFNAIQITPLENVKVVIIGQDPYHGPQQAQGLSFSVPDNLPAPPSLQNIL---KELAEDIGSRSHHDLTSWAQQGVLLLNACLTVPEHQANGHAGLIWEPFTDAVIKVVNQKETPVVFILWGGYARKKKSLIDNPIHHIIESPHPSPLSAYRGFFGSRPFSRTNHFLEEEGINEIDWLN
1UDH Chain:A ((31-242))
----AWRPLMEPELANPLTAHLLAEYNRRCQTEEVLPPREDVFSWTRYCTPDEVRVVIIGQDPYHHPGQAHGLAFSVRANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARDGVLLLNTTLTVKRGAAASHSRIGWDRFVGGVIRRLAARRPGLVFMLWGTHAQNAIR-PDPRVHCVLKFSHPSPLSKV-PFGTCQHFLVANRYLETRSISPIDWSV
General information:
TITO was launched using:
RESULT:
Template:
1UDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108160 for 1611 contacts (-67.1/contact) +
2D Compatibility (PS) -22229 + (NN) -12930 + (LL) 564
1D Compatibility (HY) -18400 + (ID) 4050
Total energy: -165205.0 ( -102.55 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_1UDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UDH-query.scw
PDB file :
Tito_Scwrl_1UDH.pdb
: