Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPELPEVETVRKGLERLVVNQEIASITIKVPKMVK--TDLNDFMISLPGKTIQQVLRRGKYLLFDFGEMVMVSHLRMEGKYLLFPNKVPDNKHFHLYFKLTNGSTLVYQDVRKFGTFELVRKSSLKDYFTQKKLGPEPTADTFQFEPFSKGLANSKKPIKPLLLDQRLVAGLGNIYVDEVLWAAKIHPQRLANQLTESETSLLHKEIIRILTLGIEKGGSTIRTYKNALGEDGTMQKYLQVYGKTGQPCPRCGCLIKKIKVGGRGTHYCPRCQCL
3GQ3 Chain:A ((1-256))
-PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRYAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEA-----------------------HLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR-
General information:
TITO was launched using:
RESULT:
Template:
3GQ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132444 for 1969 contacts (-67.3/contact) +
2D Compatibility (PS) -26529 + (NN) -13031 + (LL) 1196
1D Compatibility (HY) -17200 + (ID) 5350
Total energy: -193358.0 ( -98.20 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_3GQ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GQ3-query.scw
PDB file :
Tito_Scwrl_3GQ3.pdb
: