Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSRPIGFLDSGVGGLTVVKEMFRQLPEEEVIFIGDQARAPYGPRPAQQIREFTWQMVNFLLTKNVKMIVIACNTATAVAWQEIKEKLDIPVLGVILPGASAAIKST--NSGKVGIIGTPMTVKSDAYRQKIQALSPNTAVVSLACPKFVPIVESNQMSSSLAKKVVYETLSPLVGKLDTLILGCTHYPLLRPIIQNVMGAEVKLIDSGAETVRDISVLLNYFEINHNWQNKHGGHHFYTTASPKGFKEIAEQWLSQEINVERIVL
3UHF Chain:A ((22-271))
SNAMKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQKRLLSQGYT-NINALATGLFVPMVEEGIFEGDFLQSAMEYYFKNI-TTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENI-DLKN----HKAKLHFYASSDVESLKNTAKIWLNL---------
General information:
TITO was launched using:
RESULT:
Template:
3UHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -189099 for 2217 contacts (-85.3/contact) +
2D Compatibility (PS) -26563 + (NN) -7581 + (LL) 1688
1D Compatibility (HY) -21600 + (ID) 4000
Total energy: -247155.0 ( -111.48 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_3UHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UHF-query.scw
PDB file :
Tito_Scwrl_3UHF.pdb
: