Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIFKRKKQVEMPLEKIPAHIGIIMDGNGRWAKKRLKPRVMGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVEFFDKYVPELDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAIKEIAQDVLEAKLNPDDITEDLVANHLMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRHRRFGSV
2VG2 Chain:D ((50-284))
-----------IPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQRPDIP----DVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFGSA
General information:
TITO was launched using:
RESULT:
Template:
2VG2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122729 for 1862 contacts (-65.9/contact) +
2D Compatibility (PS) -25367 + (NN) -11903 + (LL) 1844
1D Compatibility (HY) -17200 + (ID) 5050
Total energy: -180405.0 ( -96.89 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_2VG2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VG2-query.scw
PDB file :
Tito_Scwrl_2VG2.pdb
: