Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVKQGDTLSAIASQYRTTTNDITETNEIPNPDSLVVGQTIVIPIAGQFYDVKRGDTLTSIARQFNTTAAELARVNRIQLNTVLQIGFRLYIPPAPKRDIESNAYLEPRGNQVS-ENLQQAAREASPYLTYLGAFSFQAQRNGT-LV-APP--------LTNLRS-ITESQNTTLMMIITNLENQAFSDELGRILLNDETVKRRLLNEIVENARRYGFRDIHFDFEYLRP-------QDREAYNQFLREARDLFHRE--GLEISTALAPKTSATQQGRWYEAHDYRAHGEIVDFVVLMTYEWGYSGG-PPQAVSPIG------------PVRDVIEYAL-TEMPANKIVMGQNLYGYDWTLPYTAGG--------------------TPARAVSPQQAIVIADQ--NNASIQYDQTAQAPFFRYTDAENRRHEVWFEDARSIQAKFNLIKELNLRGISYWKLGLSFPQN-----WLLLSDQFNVVKKTFR |
| 3W4R Chain:A ((24-394)) | -------------------------------------------------------------------------------------------------RARVVCYFSNWAVYRPGVGRYGIEDIPVDMCTHIIYSFIGVTEDTQQVLIIDPELDVDKNGFKNFTSLRSKHPGVKFTVAVGGWAE---GGSKYSKMVAAKSTRMAFVRSVVDFLNKYNFDGLDLDWEYPGAADRGGSFSDKDKFLYLVQELRRAFIREGKGWELTAAVPLANFR-----LMEGYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLYKRPHDQWAYEKLNVNDGLQLWEDKGCPTNKLVVGIPFYGRSFTLSSGNNNYNLGTYINKEAGGGDPAPYTNATGFWAYYEICTEVDTADSKWTKKWDEHGKCPYAYKG-----TQWVGYEDPRSVEIKMNWIKEKGYLGAMTWAIDMDDFQGLCGEKNILIKLLH-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3W4R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -143855 for 2617 contacts (-55.0/contact) +
2D Compatibility (PS) -32784 + (NN) -11426 + (LL) 8168
1D Compatibility (HY) -14800 + (ID) 2700
Total energy: -197397.0 ( -75.43 by residue)
QMean score : 0.436
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