Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKADKALLIVDMINNFEFDMGETLAKKTEKIVPHILSLKEHARQNEWPIIYINDHYGLWQADIK----NIQQEC-TNERSKDIITKIAPVDADYFL------IKPKHSAFYETALHTLLTELQVRHIIITGIAGNICVLFTANDAYMREYSITIPKDCIASNSDEDNEFALTMMENVLFAEITTEEQIIEK
1IM5 Chain:A ((2-179))
---PEEALIVVDMQRDFMPG-GALPVPEGDKIIPKVNEYIRKFKEKGALIVATRDWHPENHISFRERGGPWPRHCVQNTPGAEFVVDLPE--DAVIISKATEPDKEAYSGFEGTDLAKILRGNGVKRVYICGVATEYCVRATALDALKHGFEVYLLRDAVKGIKPEDEERALEEMKS-RGIKIVQ-------
General information:
TITO was launched using:
RESULT:
Template:
1IM5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128980 for 1370 contacts (-94.1/contact) +
2D Compatibility (PS) -17553 + (NN) -5162 + (LL) 1664
1D Compatibility (HY) -8000 + (ID) 1900
Total energy: -159931.0 ( -116.74 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_1IM5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IM5-query.scw
PDB file :
Tito_Scwrl_1IM5.pdb
: