Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLFITFEGPEGAGKTTVLQ----EIKNILTAEGLQVMATREPGGIDIAEQIREVILNENNILMDPKTEALLYAAARRQHLVEKVKPALEQGFIVLCDRFIDSSLAYQGYARGLGIDEVLSINEFAIGDMMPHVTVYFSIDPEEGLKRIYANGSREKNRLDLEKLDFHTKVQEGYQELMKRFPERFHSVDAGQSKDLVVQDVLKVIDEALKKIQL
3V9P Chain:B ((25-211))
--GKFITFEGID---KTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQP---MDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGA--VRMPDKFESESDAFFARTRAEYLRRAQEAPHRFVIVDSSE----------------------
General information:
TITO was launched using:
RESULT:
Template:
3V9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61034 for 1296 contacts (-47.1/contact) +
2D Compatibility (PS) -20152 + (NN) -13423 + (LL) 2396
1D Compatibility (HY) -7200 + (ID) 3600
Total energy: -103013.0 ( -79.49 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_3V9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V9P-query.scw
PDB file :
Tito_Scwrl_3V9P.pdb
: