Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMPDNIRKAVGLILLVSLLSVGLCKPLKEYLLIPTQMRVFETQTQAIETSLSVNAQTSESSEAFTVKKDPHEIKVTGKKSGESELVYDLAGFPIKKTKVHVLPDLKVIPGGQSIGVKLHSVGVLVVGFHQINTSEGKKSPGETAGIEAGDIIIEMNGQKIEKMNDVAPFIQKAGKTGESLDLLIKRDKQKIKTKLIPEKDEGEGKYRIGLYIRDSAAGIGTMTFYEPKTKKYGALGHVISDMDTKKPIVVENGEIVKSTVTSIEKGTGGNPGEKLARFSSERKTIGDINRNSPFGIFGTLHQPIQNNISDQALPVAFSTEVKKGPAEILTVIDDDKVEKFDIEIVSTTPQKFPATKGMVLKITDPRLLKETGGIVQGMSGSPIIQNGKVIGAVTHVFVNDPTSGYGVHIEWMLSEAGIDIYGKEKAS
1LCY Chain:A ((256-322))-----------------------------------------------------------------------------------------------------------------------HGVLIHKVIL-------GSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT----QSQLAVQIRRGRETLTLYVTPE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1LCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 261 -37948 -145.39 -566.39
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain A : 0.54

3D Compatibility (PKB) : -145.39
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.54
QMean score : 0.517

(partial model without unconserved sides chains):
PDB file : Tito_1LCY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1LCY-query.scw
PDB file : Tito_Scwrl_1LCY.pdb: