Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRIVQFGVSAVAAAAIGIGAGSGIAAAFDGEDEVTGPDADRARAAAVQ--AVPGGTAGEVETETGEGAAAYGVLVTRPDGTRVEVHLDRDFRVLDTEPADGDGG
4DSD Chain:A ((73-127))
----------------------------------VPVSIVPGFAVNYLKAHNFVNEGVTKVERD----RKGYEIELST----GLSFKFDKKGKFIKT--------
General information:
TITO was launched using:
RESULT:
Template:
4DSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13990 for 307 contacts (-45.6/contact) +
2D Compatibility (PS) -5970 + (NN) -5999 + (LL) 1184
1D Compatibility (HY) -4000 + (ID) 300
Total energy: -29075.0 ( -94.71 by residue)
QMean score : 0.304
(partial model without unconserved sides chains):
PDB file :
Tito_4DSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DSD-query.scw
PDB file :
Tito_Scwrl_4DSD.pdb
: