Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTMIVASVATGALATIARWLLTRRSVILREVGPETTPAAPARTAELGLSGAGPTVVHFRAPGCAPCDRVRRGVGDVCADLGDVAHIEVDLDSNPQAARRFSVLSLPTTLIFDVDGRQRYRTSGVPKAADLRSALKPLLA
1GH2 Chain:A ((21-107))
--------------------------------------------------GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFR-NKVRIDQYQGA-DAVGLEEKIKQHL-
General information:
TITO was launched using:
RESULT:
Template:
1GH2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49475 for 591 contacts (-83.7/contact) +
2D Compatibility (PS) -9627 + (NN) -2175 + (LL) 4708
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: -61219.0 ( -103.59 by residue)
QMean score : 0.789
(partial model without unconserved sides chains):
PDB file :
Tito_1GH2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GH2-query.scw
PDB file :
Tito_Scwrl_1GH2.pdb
: