Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGTPQPRALGPDALD--VSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKLSGAQLTCLHEAMASVLSDAVRR--SVGQGAAMLKGEK---RSGLRVHARTGLPCPVCGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
3JR4 Chain:A ((133-272))
---------LGPEPLSPAFSPAVLAERAVKTKRSVKALLLDQTVVAGFGCIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGST----------AGTFQHHLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQ----------------
General information:
TITO was launched using:
RESULT:
Template:
3JR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73475 for 965 contacts (-76.1/contact) +
2D Compatibility (PS) -13112 + (NN) -6387 + (LL) 1816
1D Compatibility (HY) -6400 + (ID) 2250
Total energy: -99808.0 ( -103.43 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_3JR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JR4-query.scw
PDB file :
Tito_Scwrl_3JR4.pdb
: