Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDHAEV-SVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGVPYT--DALPEMPEPAIEVEPPVCD-CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
2H4F Chain:A ((19-227))
-----LTGAGISTPSGIPDFRG-P------YSQ-NVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDV----PLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLK---------------------
General information:
TITO was launched using:
RESULT:
Template:
2H4F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77616 for 1562 contacts (-49.7/contact) +
2D Compatibility (PS) -21880 + (NN) -8714 + (LL) 3212
1D Compatibility (HY) -20400 + (ID) 3800
Total energy: -129198.0 ( -82.71 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_2H4F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H4F-query.scw
PDB file :
Tito_Scwrl_2H4F.pdb
: