Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPEIRAHALAIGDDLVG-RGVKALVIACNSASSACLRDARERYQVPVVEVILPAVRRAVAATRNGRIGVIGTRATITSHAYQDAFAA-AR--DTEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPLQ--RAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRIFEATGD--PEAFTKLAARFLGPVLGGVQPVHPSRIH
2JFN Chain:A ((20-272))
---PRPTVLVFDSGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGVVPAIKPAARL-TANGIVGLLATRGTVKRSYTHELIARFANECQIEM--LGSAEMVELAEAKLHGEDVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAWLLEHEAPDAKSA--DANIAFCMAMTPGAEQLLPVLQR------------------
General information:
TITO was launched using:
RESULT:
Template:
2JFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -200178 for 2147 contacts (-93.2/contact) +
2D Compatibility (PS) -26643 + (NN) -9002 + (LL) 1052
1D Compatibility (HY) -12800 + (ID) 3700
Total energy: -251271.0 ( -117.03 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_2JFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFN-query.scw
PDB file :
Tito_Scwrl_2JFN.pdb
: