Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLSGEYAPSPLDWSREQADTYMKSGGTEGTQLQGKPVILLTTVGAKTGKLRKTPLMRVEHDGQYAIVASLGGAPKNPVWYHNVVKNPRVELQDGTVTGDYDAREVFGDEKAIWWQRAVAVWPDYASYQTKTDRQIPVFVLTPVRAGG
3R5Y Chain:A ((8-147))
----GEYVPSPSEWIGNQVAQYEASDGAEAGEFDGRPLVILTTVGRKTGALRKTPVMRVEHDGRYAVVASQGGAPTHPAWYFNLVADPRAQLRDKDAVLSVVARELAGPERAEWWERAVRAYPTYQEYQDNTRRLIPVLLLEPG----
General information:
TITO was launched using:
RESULT:
Template:
3R5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47588 for 1044 contacts (-45.6/contact) +
2D Compatibility (PS) -15689 + (NN) -8599 + (LL) 116
1D Compatibility (HY) -9600 + (ID) 3700
Total energy: -85060.0 ( -81.48 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_3R5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R5Y-query.scw
PDB file :
Tito_Scwrl_3R5Y.pdb
: