Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIDIVTIFPACLDPLRQ-SLPGKAIESGLVDLNVHDLRRWTHDVHHSVDDAPYGGGPGMVMKA-------PVWGEALDEICSSETLLIVPTPAGVLFTQATAQRWTTESHLVFACGRYEGIDQRVVQDAARRMRVEEVSIGDYVLPGGESAAVVMVEAVLRLLAGVLGNPASHQDDSHSTGLDGLLEGPSYTRPASWRGLDVPEVLLSGDHARIAAWRREVSLQRTRERRPDLSHPD
4H3Y Chain:A ((22-248))
MQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLID----RVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLNDAQSAVQDSF---VDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDL----
General information:
TITO was launched using:
RESULT:
Template:
4H3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121466 for 1482 contacts (-82.0/contact) +
2D Compatibility (PS) -23793 + (NN) -10002 + (LL) -36
1D Compatibility (HY) -16800 + (ID) 4650
Total energy: -176747.0 ( -119.26 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_4H3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H3Y-query.scw
PDB file :
Tito_Scwrl_4H3Y.pdb
: