Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPALVVGPAAWHAVHVTQSSSAITPGQTAELYPGDIKSVLLTAEQIQARIAELGEQIGNDYRELSATTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGSSTSSSGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQ
3ACC Chain:A ((7-178))
---------------------------------PGN-GPVQISAEAIKKRVEELGGEIARDYQ------GKTPHLICVLNGAFIFMADLVRAIPLPLTMDFIAISSY-----------LLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKPASVRVAALLSKPSRRQVEVPIHYLGFEIEDAYVYGYGLDRAQFDRNLPFITSIRP----
General information:
TITO was launched using:
RESULT:
Template:
3ACC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144418 for 1279 contacts (-112.9/contact) +
2D Compatibility (PS) -17918 + (NN) -8583 + (LL) 3696
1D Compatibility (HY) -20000 + (ID) 4000
Total energy: -191223.0 ( -149.51 by residue)
QMean score : 0.687
(partial model without unconserved sides chains):
PDB file :
Tito_3ACC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ACC-query.scw
PDB file :
Tito_Scwrl_3ACC.pdb
: