Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MSKQIEFFFDFGSPTTYLAWTQLPRIAAAHGASIAWRPMLLGGVFKATGNHSPIEVPAKGRYTLHDLARYAKRYGVPLA-----FNPAFPINTLTLMRGAQGYLG--GEGFQPYLKAVFEALWVRQQNLGKPEVVAQVLAEAGFDPDEFLRLV---GDEQVKEGLKATTEEAVRRGVFGAPSFFVG----DQLFFGQDRLDFVAEVLAG----------
1R4W Chain:A ((2-222))
GPAPRVLELFYDVLSPYSWLGFEVLCRYQHLWNIKLKLRPALLAGIMKDSGNQPPAMVPHKGQYILKEIPLLKQLFQVPMSVPKDFFGEHVKKGTVNAMRFLTAVSMEQPEMLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACKYGAFGLPTTVAHVDGKTYMLFGSDRMELLAYLLGEKWMGPVPPTL
General information:
TITO was launched using:
RESULT:
Template:
1R4W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143626 for 1560 contacts (-92.1/contact) +
2D Compatibility (PS) -20946 + (NN) -7300 + (LL) 0
1D Compatibility (HY) -14800 + (ID) 2600
Total energy: -189272.0 ( -121.33 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_1R4W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R4W-query.scw
PDB file :
Tito_Scwrl_1R4W.pdb
: