Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKVVLYKRLSAPLMER----LRER-VEVLLVEEPGRDGLARLRDALPEAHGLLGASL-RLDAGLLDLAPRLEAIASVSVGVDNYDIDYLDRRGILLSNTPDVLTETTADTGFALILATARRVVELAGWVRAGEWKKSVGAAQFGTDVHGKTLGIVGMGRIGEALARRGHHGFGMRVLYHSHSPKPHVEERYAASYRPLDALLEESDFVCLTLPLTAATEGLIGAAQFARMRPQAIFINISRGRVVDEAALIEALAQRRIRAAGLDVFEREPLSPDSPLLRLPNVVATPHIGSATEETREAMARCAVDNLLAALAGARPLNLVNPSAWARRRGA |
1WWK Chain:B ((8-305)) | ---------VAAPLHEKAIQVLKDAGLEVIYEEYPDED---RLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKK---EAMGIELEGKTIGIIGFGRIGYQVAKIAN-ALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKIL-------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1WWK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -190602 for 2383 contacts (-80.0/contact) +
2D Compatibility (PS) -31932 + (NN) -16461 + (LL) 2516
1D Compatibility (HY) -22800 + (ID) 5200
Total energy: -264479.0 ( -110.99 by residue)
QMean score : 0.480
|
|
|