Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSLLFEPLSLRQITLPNRIAVSPMCQYSAQEG-LANDWHLVHLGSRAVGGAGLVIVEATAVLPEGR-ITADDLGIWSDAHVEPLHRITRFIESQGAVAGVQLAHAGRKASTWRPWLGKHGSVPIGDGGWIPVAPSAI-PFDPQHTTPEA-------LSEAQIEALV-QAFVRAAERSLAAGFKVAEVHAAHGYLLHQFLSPLSNQRRDQYGGCFENRIRLLLQVTAAVRKAWPQELPLFVRLSATDWVEDGWNPDETVELARHLKDLGVDLIDVSSGGTAANAEIPVGPGYQTEFAERVKKEAGIASGTVGMITEPVQAEHILRTGQADLILLARELLRDPYWPLHAADELRNEQMPWPPQYLRAAHRSTPPRKSLEMQ |
4DF2 Chain:A ((15-224)) | ----FQSIKVGNNTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGYEGAAPGIWTDKHAKAWKVITDKVHANGSFVSTQLIFLGRVAD---PAVMKTR-------GLNPVSASATYESDAAKEAAEAVGNPVRALTTQEVKDLVYETYTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILEL----------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -103608 for 1563 contacts (-66.3/contact) +
2D Compatibility (PS) -20495 + (NN) -2291 + (LL) 11048
1D Compatibility (HY) -10800 + (ID) 3750
Total energy: -129896.0 ( -83.11 by residue)
QMean score : 0.372
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