Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEPLILDAPNADACIIWLHGLGADRTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPARAIDEDQLNASADQVIALIDEQRAKGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDLAL--DERHKR-IPVLHLHGSQDDVVDPALGRAAHDALQAQ--GVEVGWHDYPM-GHEVSLEEIHDIGAWLRKRL
1FJ2 Chain:A ((20-227))
---------RKATAAVIFLHGLGDTGHGWAEAFAGIR--SSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAENIKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALT-TQQKLAGVTALSCWLPLRASFPQGPIGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQQEMMDVKQFIDKL-
General information:
TITO was launched using:
RESULT:
Template:
1FJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142447 for 1692 contacts (-84.2/contact) +
2D Compatibility (PS) -21768 + (NN) -7602 + (LL) 1444
1D Compatibility (HY) -14400 + (ID) 3450
Total energy: -188223.0 ( -111.24 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_1FJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FJ2-query.scw
PDB file :
Tito_Scwrl_1FJ2.pdb
: