Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKNVFVFSRLAPEHLERLQCQFNVRVLEPKQGDIDAQYAAALPDTHGMIGVGRPLGARQLEQAKQLEVISSVSVGYDNYDLDYLNRRGIALTNTPDVLTETTADLGFALLISAARRVAELDAWVKAGNWKRTVDAPQF-GTDVHGKKLGILGLGRIGAAIARRGRFGFGMQVLYHGNNR-KPELEQELGARFLGFDELLGEADFVCVVVPLGAQTRQLIGARELGLMKPSAILVNVARGQVVDEAALVAALREKRILGAGLDVYEKEPLA--------ESPLFALDNVVTLPHIGSATHETRRAMAERALQNFEAALRGERPLDLVNPQVWRRG |
4NU5 Chain:A ((62-326)) | ------------------------------------------------------------LQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGW--QPRFYGTGLDNATVGFLGMGAIGLAMADRLQ-GWGATLQYHAAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVALEIERCAAQNILQALAGERPINAVN------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NU5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152682 for 1984 contacts (-77.0/contact) +
2D Compatibility (PS) -28137 + (NN) -15628 + (LL) 4760
1D Compatibility (HY) -20000 + (ID) 5100
Total energy: -216787.0 ( -109.27 by residue)
QMean score : 0.504
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