Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRKVFSSQAYRHKVVLVSGGCSGIGRALALRFARAGARLAILDLDQAALDSLVQHLRDHLGGEALGLRCDVADADAVERAVALAVERFGGIDVLVNNAGITHRGTFAETGLGVFRKVMAVNFFGAVHCTRAALPS--LLER-RGQIVVLGSLTGFAPLLYRSAYNASKHALHGLFDTLRMELEGTGVSVTLACPGFTATDLRKNALVGDGSVTRQPVQVLGSQVASPVEVAEAIFQGAARRRRLLVLSNVNWRARLLARFFPRLFEKLLVPRLSGLKPQP
3CSD Chain:B ((27-222))
-------------EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-GVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRLGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPM-------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3CSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142215 for 1539 contacts (-92.4/contact) +
2D Compatibility (PS) -20477 + (NN) -12211 + (LL) 7348
1D Compatibility (HY) -11600 + (ID) 3500
Total energy: -182655.0 ( -118.68 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_3CSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CSD-query.scw
PDB file :
Tito_Scwrl_3CSD.pdb
: