Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLPSGDQPAEPGNA
4MMK Chain:B ((2-70))
-SKGHSLADPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRL------------
General information:
TITO was launched using:
RESULT:
Template:
4MMK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41666 for 420 contacts (-99.2/contact) +
2D Compatibility (PS) -7635 + (NN) -2901 + (LL) -228
1D Compatibility (HY) -11200 + (ID) 3400
Total energy: -67030.0 ( -159.60 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_4MMK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MMK-query.scw
PDB file :
Tito_Scwrl_4MMK.pdb
: