Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSF-----VQDNHSRSARGVLRGLHYQ-----IRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHE---RCIVWNDPELKIDWPLQDAPLLSEKDRQGKAFADADCFP
1NYW Chain:A ((17-182))
------AIPGMLEFDIPVHGDNRGWFKENF-QKEKMLPLGFPESFFAEGKLQNNVSFSRKNVLRGLHAEPWDKYISVADG-------GKVLGTWVDLREGE-TFGNTYQTVIDA--SKSIFVPRGVANGFQVLSDFVAYSYLVNDYWALELKPKYAFVNYADPSLDIKWENLEEAEVSEADEN-----------
General information:
TITO was launched using:
RESULT:
Template:
1NYW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73905 for 1104 contacts (-66.9/contact) +
2D Compatibility (PS) -15966 + (NN) -4366 + (LL) 1804
1D Compatibility (HY) -11200 + (ID) 3050
Total energy: -106683.0 ( -96.63 by residue)
QMean score : 0.291
(partial model without unconserved sides chains):
PDB file :
Tito_1NYW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NYW-query.scw
PDB file :
Tito_Scwrl_1NYW.pdb
: