Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRTLLLSALVAGALSCGYPTYEVQHDVSRVVGGQEASPNSWPWQVSLQYLSSGKWHHTCGGSLVANNWVLTAAHCISNS---RTYRVLLGRHSLSTSESGSLAVQVSKLVVHEKWNAQKLSNGNDIALVKLASPVALTSKIQTACLPPAGTILPNNYPCYVTGWGRLQTNGATPDVLQQGRLLVVDYATCSSASWWGSSVKTNMVCAGG-DGVTSSCNGDSGGPLNCQASNGQWQVHGIVSFGSTLGCNYPRKPSVFTRVSNYIDWINSVIAKN
2OQ5 Chain:A ((1-231))
------------------------------IVGGTEVEEGEWPWQASLQWDG----SHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTIK----PSKMKRGLRRIIVHEKYKHPS--HDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGD--ECAKPNKPGVYTRVTALRDWITSKTG--
General information:
TITO was launched using:
RESULT:
Template:
2OQ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166706 for 1926 contacts (-86.6/contact) +
2D Compatibility (PS) -24967 + (NN) -9882 + (LL) 2948
1D Compatibility (HY) -16400 + (ID) 4000
Total energy: -219007.0 ( -113.71 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_2OQ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OQ5-query.scw
PDB file :
Tito_Scwrl_2OQ5.pdb
: