Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGQVLSNDDWNRYKKEGFLVTKFGSLIDYVINWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASPRQADVMIVAGTLTNKMAAALRKVYDQMADPKYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLCLQNKIKRTQNI---
1HIW Chain:A ((8-122))
----VLSGGELDKWEK---IRLRPGGKKQY----------------------KLKHIVWASRELERFAV----NPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQR-----------------------IDVKDTKEALDKIEEEQNKSKKKAQQAAAD
General information:
TITO was launched using:
RESULT:
Template:
1HIW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33489 for 777 contacts (-43.1/contact) +
2D Compatibility (PS) -11605 + (NN) -2109 + (LL) 4112
1D Compatibility (HY) 1200 + (ID) 900
Total energy: -42791.0 ( -55.07 by residue)
QMean score : 0.226
(partial model without unconserved sides chains):
PDB file :
Tito_1HIW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HIW-query.scw
PDB file :
Tito_Scwrl_1HIW.pdb
: