Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYQVVKMFGDWEPWWFIEGWEEDITEIAEYDTLSEALLYFQEEWDRGQEKWPYFQSKSSLLATFWSIKEKRWCEECDEYLQQYHSLMLLKEWQEIPKEESIERFEVFNKIAE-LPSACSLNL-------
2EBG Chain:A ((1-106))
MQAVRLFQG---YLWHPRALALDLKAL-----LPGEVAGARLLWDEVPPPTPFFEDGTPTHT---------------QRFYQLTLLVLTEEPPEALKPLAEEAAEALGEVLEGLPPEVGWLLLEDLRPL
General information:
TITO was launched using:
RESULT:
Template:
2EBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41811 for 629 contacts (-66.5/contact) +
2D Compatibility (PS) -9721 + (NN) 4777 + (LL) 1748
1D Compatibility (HY) -2400 + (ID) 1100
Total energy: -48507.0 ( -77.12 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_2EBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EBG-query.scw
PDB file :
Tito_Scwrl_2EBG.pdb
: