Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKGLLDFLVNIASTPAILVALIAIIGLVLQKKGVPDIVKGGIKTFVGFLVVSGGAGIVQNSLNPFGKMFEHAFHLVGVVPNNEAIVAVALTKYGSATALIMLAGMIFNILIARF---TKFKYIFLTGHHTLYMACMIAVIFAVAGFTSFSLILFGGLALGIIMSVSPAFVQKYMIQLTGNDKVALGHFGSLGYWLSGFIGGIVGDKSKSTEDIKFPKSLSFLRDSTVSITISMAIIYLI------VAVFAGEAYIAKEISNGVNGLVYALQLAGQFAAGVFVILAGVRLILGEIVPAFKGI---SEKLVPNSKPALDCPIVYPYAPNAVLIGF---ISSFVGGLVSMIVMIVTGTTVIL--PGVVPHFFCGATAGVIGNASGGVRGATIGA-FVQGILISFLPIFLMPVLGGLGFKGSTFSDADFGLTGIILGALNHVGGAIAIVIGIVVILIGLFGISFVGKSTHKEG |
4QIQ Chain:A ((7-470)) | -----SYIFSITLVATLGGLLFGYDTAVISG---------TVESLNTVFVAPQNLS-ESAANSLLGFCV--ASALIGCIIG-GALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGY------VPEFVIYRII--GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMTLATQAVQEIKHSLDRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN--SWLVAHFH--NGFSYWIYGCMGVLAALFMWKFVPETKGKTL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QIQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -345179 for 3440 contacts (-100.3/contact) +
2D Compatibility (PS) -41353 + (NN) 13971 + (LL) 2672
1D Compatibility (HY) -25600 + (ID) 3300
Total energy: -398789.0 ( -115.93 by residue)
QMean score : 0.150
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