Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCKYKAIIFDMDGVLFDTELFYYKRRERFLKQHGITIDHLPMNFFIGGNMKQVWKSVLGDQ-YDTWDIDKLQQDYSRYKEDNPLPYKDLIFQDCKRVIEKLHHKGYLLGLASSSTRHDIMLALESFNLDTYFK--VILSGEEFSESKPNPAIYNRAAELLDIPKQQILIVEDSEKGITAGIAAGIDVWAIEDK-YFGMN--QSQANVLVSDLSQFFVKLDNY
3DV9 Chain:A ((21-240))
-IDLKAVLFDMDGVLFDSMPNHAESWHKIMKRFGFGLSREEAYMHEGRTGASTINIVSRRERGHDATEEEIKAIYQAKTEEFNKCPKAERMPGALEVLTKIKSEGLTPMVVTGSG---LLDRLNHN-FPGIFQANLMVTAFDVKYGKPNPEPYLMALKKGGFKPNEALVIENAPLGVQAGVAAGIFTIAVNTGPLHDNVLLNEGANLLFHSMPDFNKNWETL
General information:
TITO was launched using:
RESULT:
Template:
3DV9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105956 for 1799 contacts (-58.9/contact) +
2D Compatibility (PS) -22779 + (NN) -9957 + (LL) 196
1D Compatibility (HY) -7600 + (ID) 2200
Total energy: -148296.0 ( -82.43 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_3DV9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DV9-query.scw
PDB file :
Tito_Scwrl_3DV9.pdb
: