Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIQEIKDLMTQFDESSLREFSFKTSDGELSFSKNEGKAPLVPTMSPMSHQPEATPTIATPVSNEAGEQTKQATEVVSEIPESTVTVAEGDVVESPLVGVAYLASGPDKPNFVSVGDSVKKGQTLMIIEAMKVMNEVPAPHDGVVTEILVANEEVIEFGKGLVRIK
1BDO Chain:A ((3-80))
----------------------------------------------------------------------------------------SGHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE
General information:
TITO was launched using:
RESULT:
Template:
1BDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47675 for 515 contacts (-92.6/contact) +
2D Compatibility (PS) -8154 + (NN) 985 + (LL) 5356
1D Compatibility (HY) -8800 + (ID) 1700
Total energy: -59988.0 ( -116.48 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_1BDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BDO-query.scw
PDB file :
Tito_Scwrl_1BDO.pdb
: