Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGLLVDGKWVDQWYDTASTGGKFVRTVTQFRHWVTKDGSAGPSGDAGFKAESGRYHLYVSLACPWASRVLIMRKLKNLESHI-SISIVNPLMLENGWTFQEYKGVIPDMINQSQYLYQIYQASQSDYTGRVTVPVLWDKKCHTIVNNESSEIMRMLNTAFNHITGNTDDYYPD--SLQGQIDEMNNFIYPKINNGVYKAGFATSQNVYQKEVETLFTALDQLEKHLSD--NHYLVGEQFTEADIRLFTTLVRFDTVYYGHFKCNLKALHDYPHLWHYTKRIYNLPGIAETVNFDHIKKHYYGSHKTINPTGIIPAGPNLDWTI |
| 3VLN Chain:A ((16-234)) | ----------------------------------------------PGPVPEGSIRIYSMRFSPFAERTRLVLKAKGIRHEVININLK--------------------------NKPEWFFKKNPF--G--LVPVLENSQ-G-QLIYESAITCEYLDEAYPG-----KKLLPDDPYEKACQKMILELFSK-VPSLVGSFIRSQNKEDYAGLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWPWFERLEAMKL------NECVDHTPKLKLWMAAMKEDPTVSALLTSEKDWQGFLELYLQNSPEACDYGL------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VLN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -125838 for 1620 contacts (-77.7/contact) +
2D Compatibility (PS) -22236 + (NN) -1764 + (LL) 4196
1D Compatibility (HY) -6800 + (ID) 1600
Total energy: -154042.0 ( -95.09 by residue)
QMean score : 0.453
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