Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLVGKEIIEFSAQAYHDGKFITVTNEDVKGKWAVFCFYPADFSFVCPTELGDLQEQYETLKSLDVEVYSVSTDTHFVHKAWHDDSDV---VGTITYPMIGDPSHLISQGFDVLGQD-GLAQRGTFIIDPDGVIQMMEINADGIGRDASTLIDKVRAAQYIRQHPGEVCPAKWKEGAETLTPSLDLVGKI
3VWV Chain:A ((33-190))
-----------------NGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKH-GEVCPAGWKPG--------------
General information:
TITO was launched using:
RESULT:
Template:
3VWV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56105 for 1063 contacts (-52.8/contact) +
2D Compatibility (PS) -17054 + (NN) -11233 + (LL) 2488
1D Compatibility (HY) -14800 + (ID) 3200
Total energy: -99904.0 ( -93.98 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_3VWV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VWV-query.scw
PDB file :
Tito_Scwrl_3VWV.pdb
: