Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKKMTINDIAQLSKTSKTTVSFFLNQKFEKMSDETRQRIQEVIDETGYRPSTIARSLNSKKTKLLGVLIGDITNTFSNQIVKGIEHITK-QKGYQIIVGNSNYDAKSEEDYIENM-LNLGVDGFII-QPTSNFRKYSRILKEKKKPMVFFDSQLYEHKTSWVKANNYDAVYDMTQECLNRGYKKFIMITADTSLLSTRIERASGFMDALKDNGFGYDTLVIEDDDHSKSDIEDFLKAVVPDKEE-TLVFAPNCW-ALPMVFTAMKNLNFDMPR-VGLVGFDNIEWTD-FSSPKVSTIVQP-AYEEGEQVAQ-ILINRI-EGDDSVDNQQIVDCQMFWKESTF |
| 1RZR Chain:A ((2-332)) | ---NVTIYDVAREASVSMATVSRVVNGN-PNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMY-KYNIILSNSDQNQDKELHLLN-NMLGKQVDGIIFMSGNVT-EEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMAL-GVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVR-PQLTSVVQPMY---DIGAVAMRLLTKYMNKETVDSSIVQLPHRIEFRQSTK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RZR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158149 for 2608 contacts (-60.6/contact) +
2D Compatibility (PS) -34729 + (NN) -12474 + (LL) 624
1D Compatibility (HY) -13600 + (ID) 4050
Total energy: -222378.0 ( -85.27 by residue)
QMean score : 0.538
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