Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKLRRPVLEDKEEILAMYKEFQKESSSVDGGFYEPTMHFEDWLDHNLNMELGVGVPDNFVPYIQFVSFDNDNNAIGFLNLRLRLNDTLLEKGGHIGYSIRPRQRGKGYAKEQ-LKLGIEQAHLKNINEILVTCHVDNDASKSVILANG----GVLEDCLHQTERYWIT--------------
3D3S Chain:A ((26-184))
RYHLRPPRRNDGAAIHQLVSECPPLDLNSLYAYLLLCEHHAHTC---------------------VVAESPGGRIDGFVSAYLLPTRP--DVLFVWQVAVHSRARGHRLGR-AMLGHILERQECRHVRHLETTVGPDNQASRRTFAGLAGERGAHVSEQPFFDRQAFGGADHDDEMLLRIGPF
General information:
TITO was launched using:
RESULT:
Template:
3D3S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30335 for 952 contacts (-31.9/contact) +
2D Compatibility (PS) -14284 + (NN) -2312 + (LL) 1272
1D Compatibility (HY) -2000 + (ID) 1050
Total energy: -48709.0 ( -51.16 by residue)
QMean score : 0.267
(partial model without unconserved sides chains):
PDB file :
Tito_3D3S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D3S-query.scw
PDB file :
Tito_Scwrl_3D3S.pdb
: