Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKNPKDGESRTFLISVAAELAGMHAQTLRTYDRLGLVSPRRTS-GGGRRYSLHDVELLRQVQHLSQDEGVNLAGIKRIIEL--TSQVEALQSRLQEMAEELAVLRANQRREVAVVPKSTALVVWKPRR
1JBG Chain:A ((2-107))
-----------KYQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEI-GFRLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLS-----------
General information:
TITO was launched using:
RESULT:
Template:
1JBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31203 for 613 contacts (-50.9/contact) +
2D Compatibility (PS) -11685 + (NN) -7576 + (LL) 1300
1D Compatibility (HY) -4800 + (ID) 1250
Total energy: -55214.0 ( -90.07 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_1JBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JBG-query.scw
PDB file :
Tito_Scwrl_1JBG.pdb
: